Package index • QBMS

All functions

brapi_get_call(): Internal Function for Core BrAPI GET Calls

brapi_map: BrAPI Mapping Table

brapi_post_search_allelematrix(): Internal Function Used for Core BrAPI POST Calls (Allele Matrix Search)

brapi_post_search_call(): Internal Function Used for Core BrAPI POST Calls

build_pedigree_table(): Building Pedigree Table Recursively

calc_biovars(): Calculate the Bioclimatic Variables

debug_qbms(): Debug Internal QBMS Status Object

get_async_page(): Asynchronously Fetch a Single API Page

get_async_pages(): Asynchronously Fetch Multiple API Pages

get_brapi_url(): Get the BrAPI Endpoint URL for a given QBMS function

get_germplasm_attributes(): Retrieve Attributes for a Specified Germplasm

get_germplasm_data(): Retrieve Observations Data for a Specified Germplasm.

get_germplasm_id(): Get Germplasm ID for a Specified Germplasm Name

get_germplasm_list(): Get the Germplasm List of the Current Active Study

get_hwsd2(): Get HWSD v2 Soil Data for a Given Location(s)

get_login_details(): Login Pop-Up Window

get_marker_map(): Get marker position information

get_parents(): Get Direct Parents

get_pedigree_table(): Get the Pedigree Table

get_program_studies(): Get the List of Trials, Studies, and Locations Information for the Current Selected Program

get_program_trials(): Retrieve the List of Trials for the Active Breeding Program

get_qbms_connection(): Get the QBMS Connection

get_study_data(): Get the Observations Data of the Current Active Study

get_study_info(): Get the Details/Metadata of the Current Active Study

get_terraclimate(): Get TerraClimate Data for a Given Coordinate(s)

get_trial_data(): Get the Observations Data of the Current Active Trial

get_trial_obs_ontology(): Get the Traits Ontology/Metadata of the Current Active Trial

get_trial_pedigree(): Get the Pedigree table for the Selected Trial

get_variants(): Get Marker Matrix from the Selected Variant Set

get_variantset(): Get Marker Matrix from the Selected Variant Set

gigwa_get_allelematrix(): Get Markers Matrix in the Selected GIGWA Run

gigwa_get_markers(): Get Markers Map in the Selected GIGWA Run

gigwa_get_metadata(): Get the Metadata of the Current Active GIGWA Run

gigwa_get_samples(): Get the Samples List of the Current Active GIGWA Project

gigwa_get_sequences(): Get the Sequences of the Current Active GIGWA Project

gigwa_get_variants(): Get Available Variants in the Selected GIGWA Run

gigwa_list_dbs(): List GIGWA Databases

gigwa_list_projects(): Get the List of All Projects in the Selected GIGWA Database

gigwa_list_runs(): Get the List of the Run Names Available in the Selected GIGWA Project

gigwa_set_db(): Set the Current Active GIGWA Database by Name

gigwa_set_project(): Set the Current Active GIGWA Project

gigwa_set_run(): Set the Current Active GIGWA Run

ini_hwsd2(): Download and Setup HWSD v2.0 Data Files to Extract their Data Offline

ini_terraclimate(): Download TerraClimate netCDF Data Files to Extract their Data Offline

list_crops(): Retrieve Supported Crops from the Server

list_locations(): Get the List of Locations Information of the Current Selected Crop

list_programs(): Retrieve Breeding Programs for the Active Crop

list_studies(): Get the List of Studies in the Current Active Trial

list_trials(): List Trials in the Current Active Breeding Program

list_variantsets(): List Variant Sets in the Selected Study

login(): Login to a BrAPI Server

login_bms(): Login to the Server

login_breedbase(): Login to the BreedBase Server

login_germinate(): Login to the Germinate Server

login_gigwa(): Login to the GIGWA Server

login_oauth2(): Login using OAuth 2.0 Authentication

rbindlistx(): Make One Data.Table from a List of Many

rbindx(): Combine Data Frames by Row, Filling in Missing Columns

scan_brapi_endpoints(): Scan BrAPI Endpoints

set_crop(): Set the Current Active Crop

set_program(): Set the Current Active Breeding Program

set_qbms_config(): Configure BMS Server Settings

set_qbms_connection(): Set the QBMS Connection

set_study(): Set the Current Active Study

set_token(): Set Access Token Response

set_trial(): Set the Current Active Trial

set_variantset(): Set the Active Variant Set