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Get Marker Matrix from the Selected Variant Set

Source: R/gigwa.R
get_variants.Rd

Get a two-dimensional marker matrix for all samples in the currently active variant set. This function is used as an alternative to the get_variantset() function when the server does not support it.

Note: This approach is significantly slower than get_variantset because it fetches data page by page through the BrAPI API, rather than downloading the full matrix in one Falpjack format file.

Usage

get_variants()

See also

set_qbms_config, set_variantset

Author

Khaled Al-Shamaa (k.el-shamaa@cgiar.org)