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Get the Sequences of the Current Active GIGWA Project

Source: R/gigwa.R
gigwa_get_sequences.Rd

Retrieve the list of sequences (e.g., chromosomes) associated with the currently active project in GIGWA, which has been set using the `gigwa_set_project()` function.

Usage

gigwa_get_sequences()

Value

A vector of sequence names (e.g., chromosome names) for the selected project.

See also

set_qbms_config, gigwa_set_project

Author

Khaled Al-Shamaa (k.el-shamaa@cgiar.org)

Examples

if (interactive()) {
  set_qbms_config("https://gigwa.southgreen.fr/gigwa/", 
                  time_out = 300, engine = "gigwa", no_auth = TRUE)
  gigwa_set_db("Sorghum-JGI_v1")
  gigwa_set_project("Nelson_et_al_2011")
  chroms <- gigwa_get_sequences()
}